SACS provides sequence analysis tools, database search tools, protein secondary structure prediction, motifs, mapping and alignment.

The following programs are supported:

Software Suites	GCG EMBOSS (alternative to GCG) Staden package (xterm)
Database Search	BLAST (GCG or standalone version), FASTA (GCG or standalone version), ACEDB (xterm), TRANSFAC
Genomics	Phred, Phrap, Consed (xterm), Glimmer, Genotator (xterm), Genefinder, Wisetools
Protein Analysis	Pratt
RNA Analysis	MFold, Cove, tRNAscan
Comparison	Clustalw, MSA, Pima, hmmer, mase, alscript, belvu, seaview
Phylogeny	Phylip (General Description, Web Pages ), Njplot

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