• Academic Links
• Resources
• Meetings
• Articles & Papers
• Hardware & Software
• Booklist

Academic Links

• Affymetrix Genechip Resource     (Yale)
• GRID IT: Resources for Microarray Technology    (Virginia Tech Expresso Group)
• Laboratory for the Statistical Analysis of Microarray Data    (Stanford)
• microarray software    (DeRisi Lab, UCSF)
• Pat Brown's Lab   (Stanford)
• StanfordMicroarray Database
• Microarray Expression Profiling of Rodent Models of Human Disease    (Program for Genomic Applications)
• Terry Speed's Microarray Analysis Group     (UC Berkeley)
• UCLA Microarray Core Facility
• UCSD Array Science
• University of ManchesterMicroarray Group     (UK)

• ADIS (Max Planck Institute)
• BioChipNet (Biochip technology database)
• BioConductor (Swiss Federal Institute of Technology, Zurich)
• Center for Applied Genomics (International Center for Public Health, Newark, NJ)
• EBI - Microarray Informatics (European Bioinformatics Institute)
• GenMAPP (Gene Microarray Pathway Profiler - UCSF)
• Lab-on-a-Chip.com (Technology Networks)
• MGED Society (Microarray Gene Expression Data Society)
• Microarray User Group (NIH special interest group)
• NHGRI Microarray Project
• TIGR Microarray Resources

• ArrayExpress (EBI)
• Dragon Database - Database Referencing of Array Genes Online (Pevsner Lab,Kennedy Krieger Institute)
• GEO - Gene Expression Omnibus (NCBI)
• KEGG - Kyoto Encyclopedia of Genes and Genomes (Bioinformatics Center, Institute for Chemical Research, Kyoto University)
• MAExplorer - Microarray Explorer (National Cancer Institute)
• maxd (Manchester Bioinformatics)
• NOMAD - open source system for storage and query (UCSF - Data displayed in browser)
• Pfam - Protein families database of alignments and HMMs (Sanger Institute)
• The Pevsner Laboratory (Kennedy Krieger Institute)
• RAD - RNA Abundance Database (University of Pennsylvania)
• SNOMAD - Standardization and Normalization of Microarray Data (Pevsner Lab, Kennedy Krieger Institute - Gene expression data analysis tool; output displayed as HTML page or sent as email text file)
• The StanfordMicroarray Database
• Yeast Microarray Global Viewer (Genopole, France)

• CAMDA 2007   Seventh Annual Critical Assessment of Microarray Data Analysis
  November 15-16, 2007
  Spain

• New Applications for MDA: Integrating Genetics with "OMICS"  Cambridge Healthtech Institute
  August 15-17, 2007
  Washington, D.C.

Archive

2006

• 13th Annual Chips to Hits Conference     IBC Life Sciences
  September, Boston, MA
  
• 6th Annual Total Microarray Data Analysis and Interpretation     Cambridge Healthtech Institute
  August, Washington, D.C.
  
• CAMDA 2006   Sixth Annual Critical Assessment of Microarray Data Analysis
  June, North Carolina
  

• Biomarker Discovery Summit (Cambridge Healthtech)
  Sept, Philadelphia
• MGED 8 (8th International Meeting of the Microarray Gene Expression Data Society)
  Sept, Norway
• Total Microarray Data Analysis and Interpretation  Cambridge Healthtech Institute
  August, Washington, D. C.
• 6th Annual Microarrays in Medicine  Cambridge Healthtech Institute
  May, Boston

• CAMDA 2004 (Critical Assessment of Microarray Data Analysis)
  Nov, Durham
• ASHG: Annual Meeting 2004 (The American Society of Human Genetics)
  Oct, Toronto
• MGED 7 (Microarray Gene Expression Data Society)
  Sept, Canada
• Total Miroarray Data Analysis and Interpretation (Cambridge Healthtech International)
  Aug, Washington DC
• BioArrays - 2004 - New York Meeting (Gene Expression Systems)
  July, New York
• Microarrays in Medicine (CHI)
  April, Boston

• BioArrays - 2003 (Biochips in Diagnostics, Industrial Genomics & Proteomics: Systemomics Approaches)
  Oct, New York
• 3rd Annual Microarray Data Analysis (Cambridge Health Institute)
  Sept, Baltimore
• MGED 6 (6th International Meeting of the Microarray Gene Expression Data Society)
  Sept, France
• 4th Annual Macroresults for Microarrays (CHI)
  May, Boston
• Proteins to Profits (Cambridge Healthtech Institute)
  April, Munich
• 5th Annual Lab-on-a-Chip and Microarrays (Cambridge Healthtech Institute)
  Feb, Zurich
• Informatics and Microarray Data Analysis (CHI)
  Feb, Zurich

• Affymetrix Events
  • Past Events
• Jackson Laboratory Courses
• CHI Past Conferences

• Affymetrix Scientific Publications
• Bibliography in Microarray Data Analysis (North Shore LIJ Research Institute)
• Build your own arrayer (Brown Lab, Stanford University)
• DNA Microarray (Genome Chip) - Monitoring the Genome on a Chip (Leming Shi)
• Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays (Brenner, Johnson et al - Nature Magazine, June 2000)
• Gene Networks from Microarray Data (Bas Dutilh, Utrecht University, Oct 1999 - Thesis)
• Knowledge-Based Analysis of Microarray Gene Expression Data Using Support Vector Machines (Brown et al - PNAS, Nov 1999)
• Microarray Analysis of Drosophila Development During Metamorphosis (White et al - Science, Nov 1999)
• Microarray Informatics Resource Page (Inge Jonassen, University of Bergen)
• Microarray Expression Data Analysis References (Article list - University of Wisconsin, Madison)
• Nature magazine articles (Volume 21 Supplement, 1999)
• Nonsense-mediated Decay (10/13/1999, NCBI article)
• Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human protate cancer (Nature Genetics PDF)
• RESOURCERER: a database for annotating and linking microarray resources within and across species (J Tsai, R Sultana, J Quakenbush and colleagues - Genome Biology 2001, Volume 2 Issue 11)
• Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture (Genome Biology 2005, Volume 6 Issue 6)

• Affymetrix
• Applied Biosystems (Instruments, software and services)
• Arrayjet Ltd (Inkjet spotter)
• BD Biosciences (Cytometric Bead Array)
• Beckman Coulter (Biomek 2000 Workstation)
• Beecher Instruments (Manually operated tissue arrayer)
• Biolog (Phenotype microarrays)
• BioRobotics Ltd. (MicroGrid)
• CombiMatrix (Custom DNA Microarrays)
• GeneData (Analysis software)
• Gene Codes Corporation (Software - Sequencher)
• Gene Logic (ASCENTA, Genesis 2.0)
• Illumina (BeadArray fiber-optic bundle system)
• Incyte Genomics (Databases, software & analysis - LifSeq)
• Instrumedics Inc. (Requires Java Browswer)
• Luminex (Bead-based xMAP multianalyte profiling assay system)
• MDS Analytical Technologies - purchased Axon Instruments (Functional Genomics product line)
• Nanogen (NanoChip Workstation and Electronic Microarray)
• OmniViz (Analysis and visualization tools, compatable with Affymetrix Analysis Data Model [AADM]-compliant databases - Java/Flash home page)
• Open Channel Foundation (Onto-Express gene function profiling software)
• Premier BioSoft (Analysis software - Array Designer)
• Procognia (Automated glycoanalysis and protein function arrays for mass spectrometry, fluorescence)
• Scanalytics (Gel analysis software)
• Silicon Genetics (Gene expression analysis software)
• Stratagene (Instrumentation and products)

• DNA Microarrays: A Practical Approach (Edited by Mark Schena)
• Expression Genetics: Accelerated and High Throughput Methods (Edited by Michael McClelland and Arthur B. Pardee)
• Microarray Biochip Technology (Edited by Mark Schena)
• Microarray Books at Bio.com

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