Search BLASTable Databases with FASTA

Using May 05 release of version 3.4t25 Nov 12, 2004

Choose program and database to query:
Program:

Databases:
Protein
NCBI/Blast NR protein database
NRDB90
GenPept GenBank CDS's translated
Swiss-Prot (Uniprot)
Trembl (Uniprot)
Proteins New in Last Month
PDB seqs of known 3D structures
Transcription Factor Database Protein Sites
E. coli protein sequences
Mitochondrial protein sequences
Yeast (S. cerevisiae) proteins
 DNA
DNA New in Last Month
PDB nucleotides
Transcription Factor Database DNA Sites
E. coli DNA sequences
Mitochrondial DNA sequences
Yeast (S. cerevisiae) DNA sequence
Eukaryotic Promoter Database
Note:The slowness of the program in combination with the increased size of the major nucleotide databases (nt, human_est, mouse_est, other_est, htg) results in timed out processes. Sequence type:
Protein DNA DNA (rev-comp)

Enter query sequence: 
Entrez protein sequence browser

Entrez DNA sequence browser



Other options:
Ktup: Protein matrix: gap: ext:

Output limits:
E(): scores: alignments: Histogram:

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last updated 8/11/05
Copyright 1988, 1991, 1992, 1993, 1994 1995, 1997 by William R. Pearson and the University of Virginia. All rights reserved. The FASTA program and documentation may not be sold or incorporated into a commercial product, in whole or in part, without written consent of William R. Pearson and the University of Virginia.