The Staden Package Mini-Manual

• Preface
• Sequence Assembly and Finishing Using Gap4
• Introduction
  • Summary of the Files used and the Preprocessing Steps
  • Summary of Gap4's Functions
  • Introduction to the gap4 User Interface
    • Introduction to the Contig Selector
    • Introduction to the Contig Comparator
    • Introduction to the Template Display
    • Introduction to the Consistency Display
    • Introduction to the Restriction Enzyme Map
    • Introduction to the Stop Codon Map
    • Introduction to the Contig Editor
    • Introduction to the Contig Joining Editor
• Preparing Readings for Assembly Using Pregap4
• Introduction
  • Summary of the Files used and the Processing Steps
  • Introduction to the Pregap4 User Interface
    • Introduction to the Files to Process Window
    • Introduction to the Configure Modules Window
    • Introduction to the Textual Output Window
    • Introduction to Running Pregap4
• Viewing Traces Using Trev
• Comparing Sequences Using Sip4
• Introduction to Sip4
  • Summary of the Sip4 Functions
  • Introduction to the Sip4 User Interface
    • Introduction to the Sip4 Plot
    • Introduction to the Sip4 Sequence Display
• Analysing Nucleotide Sequences Using Nip4
• Introduction
  • Summary of the Nip4 Functions
  • Introduction to the Nip4 User Interface
    • Introduction to the Nip4 Plot
    • Introduction to the Nip4 Sequence Display

This document was generated on 20 March 2000 using the texi2html translator version 1.39 (with local modifications)