SAM on Socrates

SAM

Sequence Alignment and Modeling Software System (Version 3.2)

This is the documentation index for the SAM software installed on host socrates.cgl.ucsf.edu
From here you can access locally installed SAM documentation in html, postscript and PDF formats.

Please note that the postscript and PDF files contain 105 pages.

SAM Programs Installed on Socrates

SamT99.pm              fw0.7*                 multi_roc2.pl*
addfims*               fw0.8*                 permuteseq*
align2model*           fw1.0*                 prettyalign*
build-weighted-model*  grabdp*                readseq*
buildmodel*            hmmconvert*            readseq.sam*
checkseq*              hmmer2sam*             sam-t99-configure*
convertmodel.pl*       hmmscore*              sam-t99.conf
dbletters*             make_template*         sam2hmmer*
drawmodel*             makehist*              sampleseqs*
fh0.3*                 makeroc*               sortseq*
fh0.5*                 makeroc2*              target99*
fw0.1*                 makeroc3*              uniqueseq*
fw0.2*                 makeroc4*              varh50*
fw0.3*                 modelfromalign*        w0.5*
fw0.5*                 modifymodel*

Here are links to the SAM homepages and documentation at UCSC.

SAM Homepage at UCSC.

SAM Documentation at UCSC.

SAM on the Web.

For more information contact SACS at sacs@cgl.ucsf.edu or by phone 476-5379.